Ref. Type Pathogen(s) Host(s) Scale Timestep Stoch. or Det. Prog. lang. Git internal ID
Sébastien Picault, 2022 Mechanistic BRD complex cattle (young animals) batch discrete-time stochastic Python, EMULSION Yes mod_iOMrqP
Pauline Ezanno et al., 2020 Mechanistic MAP cattle population, metapopulation discrete-time stochastic C/C++ Yes mod_iPcpuR
Gaël Beaunée et al., 2022 Mechanistic ASF wild boar, domestic pig population, metapopulation discrete-time, continuous time stochastic C/C++ Yes mod_iPj9Dd
Glen Guyver-Fletcher, 2024 Mechanistic FMD cattle metapopulation discrete-time stochastic C/C++ Yes mod_iPBa1P
Sébastien Picault et al., 2020 Mechanistic ASF wild boar, domestic pig population, metapopulation discrete-time stochastic Python, EMULSION Yes mod_iPEN4T
Lina Cristancho-Fajardo et al., 2022 Mechanistic BVD cattle population, metapopulation discrete-time stochastic Python Yes mod_iPLSXj
Timothée Vergne et al., 2020 Mechanistic HPAI H5N8 ducks population discrete-time stochastic Fortran Yes mod_iPM0xt
Brandon Hayes et al., 2023 Mechanistic ASF domestic pig, wild boar population;metapopulation discrete-time stochastic R Yes mod_iQfmlx
Thanawat Tiensin et al., 2007 Mechanistic HPAI H5N1 chickens population discrete-time stochastic R No mod_iQW3J7
A. Ssematimba et al., 2019 Mechanistic HPAI H5N2 turkeys population discrete-time stochastic R, SAS No mod_iQW42t
Peter H. F. Hobbelen et al., 2020 Mechanistic HPAI H5N8 chickens, ducks population discrete-time stochastic, deterministic R No mod_iQW4lP
Yoko Hayama et al., 2022 Mechanistic HPAI H5N8 broiler chickens population discrete-time stochastic, deterministic R No mod_iQW4Fb
Sebastian Lequime et al., 2020 Mechanistic ZIKV Humans, Aedes albopictus within host/vector, population discrete-time stochastic R No mod_iR08hb
Jennifer S. Lord et al., 2023 Mechanistic ZIKV, DENV Aedes aegypti mosquitoes within host/vector discrete-time, continuous time stochastic, deterministic R Yes mod_iR08Ax
Necibe Tuncer et al., 2021 Mechanistic ZIKV Humans, Aedes aegypti mosquitoes within host/vector continuous time deterministic MATLAB Yes mod_iR08TT
Rebecca M. Johnson et al., 2024 Mechanistic DENV Aedes aegypti mosquitoes within host/vector continuous time deterministic R Yes mod_iR09mV
Hélène Cecilia, 2020 Mechanistic RVFV cattle, small ruminants, Aedes vexans arabiensis, Culex poicilipes, Culex tritaeniorhynchus population discrete-time determinist R Yes mod_iRHXF5
Hélène Cecilia, 2022 Mechanistic RVFV cattle, sheep, goat, Aedes spp., Culex spp. within host/vector continuous time determinist R Yes mod_iRHYBj
Hélène Cecilia, 2019 Mechanistic Glossina palpalis gambiensis population discrete-time determinist Python;EMULSION Yes mod_iRHZZV
Léa Loisel et al., 2024 Mechanistic CHIKV, DENV, ZIKV Aedes ageypti, Aedes albopictus, Aedes polynesiensis, Aedes geniculatus within host/vector discrete-time stochastic R Yes mod_iRKPEz